HL_7JT1_024

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT1_024 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5702

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

7JT1|1|1|U|884
7JT1|1|1|C|885
7JT1|1|1|A|886
7JT1|1|1|U|887
7JT1|1|1|C|888
7JT1|1|1|C|889
7JT1|1|1|C|890
7JT1|1|1|G|891
7JT1|1|1|A|892

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13