HL_7JT1_065

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7JT1|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT1_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.131

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7JT1|1|1|C|2745
7JT1|1|1|U|2746
7JT1|1|1|G|2747
7JT1|1|1|A|2748
7JT1|1|1|A|2749
7JT1|1|1|A|2750
7JT1|1|1|G|2751
7JT1|1|1|C|2752
7JT1|1|1|A|2753
7JT1|1|1|U|2754
7JT1|1|1|C|2755
7JT1|1|1|U|2756
7JT1|1|1|A|2757
7JT1|1|1|A|2758
7JT1|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13