HL_7JT1_102
3D structure
- PDB id
- 7JT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 7JT1|1|5|U|17|||A, 7JT1|1|5|G|18, 7JT1|1|5|G|19, 7JT1|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JT1_102 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.221
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7JT1|1|5|C|13
7JT1|1|5|A|14
7JT1|1|5|G|15
7JT1|1|5|C|16
7JT1|1|5|C|17
7JT1|1|5|U|17|||A
7JT1|1|5|G|18
7JT1|1|5|G|19
7JT1|1|5|U|20
7JT1|1|5|A|21
7JT1|1|5|G|22
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- 50S ribosomal protein L5
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