HL_7JT2_027

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7JT2|1|1|U|1066, 7JT2|1|1|A|1067, 7JT2|1|1|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_027 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3021

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7JT2|1|1|C|1064
7JT2|1|1|U|1065
7JT2|1|1|U|1066
7JT2|1|1|A|1067
7JT2|1|1|G|1068
7JT2|1|1|A|1069
7JT2|1|1|A|1070
7JT2|1|1|G|1071
7JT2|1|1|C|1072
7JT2|1|1|A|1073
7JT2|1|1|G|1074

Current chains

Chain 1

23S ribosomal RNA

Nearby chains