HL_7JT2_050

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

7JT2|1|1|C|2145, 7JT2|1|1|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_050 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.278

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7JT2|1|1|A|2142
7JT2|1|1|C|2143
7JT2|1|1|G|2144
7JT2|1|1|C|2145
7JT2|1|1|C|2146
7JT2|1|1|A|2147
7JT2|1|1|G|2148
7JT2|1|1|U|2149

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S11