HL_7JT2_060

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAGUAGG

Length

10 nucleotides

Bulged bases

7JT2|1|1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_060 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3818

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7JT2|1|1|C|2527
7JT2|1|1|U|2528
7JT2|1|1|G|2529
7JT2|1|1|A|2530
7JT2|1|1|A|2531
7JT2|1|1|G|2532
7JT2|1|1|U|2533
7JT2|1|1|A|2534
7JT2|1|1|G|2535
7JT2|1|1|G|2536

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6