HL_7JT2_065

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7JT2|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1164

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7JT2|1|1|C|2745
7JT2|1|1|U|2746
7JT2|1|1|G|2747
7JT2|1|1|A|2748
7JT2|1|1|A|2749
7JT2|1|1|A|2750
7JT2|1|1|G|2751
7JT2|1|1|C|2752
7JT2|1|1|A|2753
7JT2|1|1|U|2754
7JT2|1|1|C|2755
7JT2|1|1|U|2756
7JT2|1|1|A|2757
7JT2|1|1|A|2758
7JT2|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13