HL_7JT2_082

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3774

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7JT2|1|3|G|462
7JT2|1|3|U|463
7JT2|1|3|U|464
7JT2|1|3|A|465
7JT2|1|3|A|466
7JT2|1|3|U|467
7JT2|1|3|A|468
7JT2|1|3|C|469
7JT2|1|3|C|470

Current chains

Chain 3

16S ribosomal RNA

Nearby chains