HL_7JT2_102
3D structure
- PDB id
- 7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB bound in the A site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 7JT2|1|5|C|17, 7JT2|1|5|U|17|||A, 7JT2|1|5|G|18, 7JT2|1|5|G|19, 7JT2|1|5|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JT2_102 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.187
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
7JT2|1|5|C|13
7JT2|1|5|A|14
7JT2|1|5|G|15
7JT2|1|5|C|16
7JT2|1|5|C|17
7JT2|1|5|U|17|||A
7JT2|1|5|G|18
7JT2|1|5|G|19
7JT2|1|5|U|20
7JT2|1|5|A|21
7JT2|1|5|G|22
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- 50S ribosomal protein L5
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