HL_7K00_032

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UCAGGGGAGA

Length

10 nucleotides

Bulged bases

7K00|1|Y|G|18, 7K00|1|Y|G|19, 7K00|1|Y|G|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K00_032 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.4311

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

7K00|1|Y|U|12
7K00|1|Y|C|13
7K00|1|Y|A|14
7K00|1|Y|G|15
7K00|1|Y|G|18
7K00|1|Y|G|19
7K00|1|Y|G|20
7K00|1|Y|A|21
7K00|1|Y|G|22
7K00|1|Y|A|23

Current chains

Chain Y

A-site tRNA-val

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA