HL_7K00_034
3D structure
- PDB id
- 7K00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome at 2 Angstrom Resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7K00_034 not in the Motif Atlas
- Homologous match to HL_5WWT_002
- Geometric discrepancy: 0.132
- The information below is about HL_5WWT_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7K00|1|Y|G|53
7K00|1|Y|U|54
7K00|1|Y|U|55
7K00|1|Y|C|56
7K00|1|Y|G|57
7K00|1|Y|A|58
7K00|1|Y|U|59
7K00|1|Y|C|60
7K00|1|Y|C|61
Current chains
- Chain Y
- A-site tRNA-val
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: