3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
GGUAACAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7K00_058 not in the Motif Atlas
Homologous match to HL_5J7L_154
Geometric discrepancy: 0.137
The information below is about HL_5J7L_154
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

7K00|1|a|G|712
7K00|1|a|G|713
7K00|1|a|U|714
7K00|1|a|A|715
7K00|1|a|A|716
7K00|1|a|C|717
7K00|1|a|A|718
7K00|1|a|C|719

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain O
30S ribosomal protein S15
Chain c
50S ribosomal protein L2

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