3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
GUG(6MZ)AGAUGC
Length
10 nucleotides
Bulged bases
7K00|1|a|A|2031, 7K00|1|a|G|2032
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7K00_084 not in the Motif Atlas
Homologous match to HL_5J7L_183
Geometric discrepancy: 0.0586
The information below is about HL_5J7L_183
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.2
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
8

Unit IDs

7K00|1|a|G|2027
7K00|1|a|U|2028
7K00|1|a|G|2029
7K00|1|a|6MZ|2030
7K00|1|a|A|2031
7K00|1|a|G|2032
7K00|1|a|A|2033
7K00|1|a|U|2034
7K00|1|a|G|2035
7K00|1|a|C|2036

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain q
50S ribosomal protein L21
Chain z
50S ribosomal protein L32

Coloring options:


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