HL_7K54_012

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7K54|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K54_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1156

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7K54|1|1|G|410
7K54|1|1|G|411
7K54|1|1|A|412
7K54|1|1|C|413
7K54|1|1|C|414
7K54|1|1|A|415
7K54|1|1|U|416
7K54|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15