HL_7K54_082

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7K54|1|3|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K54_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2176

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7K54|1|3|G|462
7K54|1|3|U|463
7K54|1|3|U|464
7K54|1|3|A|465
7K54|1|3|A|466
7K54|1|3|U|467
7K54|1|3|A|468
7K54|1|3|C|469
7K54|1|3|C|470

Current chains

Chain 3

16S ribosomal RNA

Nearby chains