HL_7K54_103

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUGGGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K54_103 not in the Motif Atlas

Homologous match to HL_6UGG_005

Geometric discrepancy: 0.1796

The information below is about HL_6UGG_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_83632.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7K54|1|5|G|31
7K54|1|5|U|32
7K54|1|5|U|33
7K54|1|5|U|34
7K54|1|5|G|35
7K54|1|5|G|36
7K54|1|5|G|37
7K54|1|5|A|38
7K54|1|5|C|39

Current chains

Chain 5

tRNAPro

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 4

mRNA

Chain 6

Transfer RNA; tRNA

Chain 8

Elongation factor G