HL_7K5I_012
3D structure
- PDB id
- 7K5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-COV-2 nsp1 in complex with human 40S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7K5I_012 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1338
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7K5I|1|2|A|569
7K5I|1|2|C|570
7K5I|1|2|U|571
7K5I|1|2|U|572
7K5I|1|2|U|573
7K5I|1|2|A|574
7K5I|1|2|A|575
7K5I|1|2|A|576
7K5I|1|2|U|577
7K5I|1|2|C|578
7K5I|1|2|C|579
7K5I|1|2|U|580
7K5I|1|2|U|581
Current chains
- Chain 2
- 40S ribosomal rRNA18S
Nearby chains
- Chain J
- 40S ribosomal protein S9
- Chain Y
- 40S ribosomal protein S24
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