HL_7K5I_028

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

7K5I|1|2|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K5I_028 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4317

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7K5I|1|2|C|1460
7K5I|1|2|G|1461
7K5I|1|2|U|1462
7K5I|1|2|U|1463
7K5I|1|2|C|1464
7K5I|1|2|A|1465
7K5I|1|2|G|1466

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain R

40S ribosomal protein S17

Chain g

Receptor of activated protein C kinase 1