HL_7K98_004

3D structure

PDB id

7K98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS)

Experimental method

X-RAY DIFFRACTION

Resolution

2.19 Å

Loop

Sequence

CAGUCGGUAG*G

Length

11 nucleotides

Bulged bases

7K98|1|F|C|17, 7K98|1|F|G|18, 7K98|1|F|G|19, 7K98|1|F|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K98_004 not in the Motif Atlas

Homologous match to HL_7EQJ_004

Geometric discrepancy: 0.1196

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7K98|1|F|C|13
7K98|1|F|A|14
7K98|1|F|G|15
7K98|1|F|U|16
7K98|1|F|C|17
7K98|1|F|G|18
7K98|1|F|G|19
7K98|1|F|U|20
7K98|1|F|A|21
7K98|1|F|G|23
*
7K98|1|F|G|23

Current chains

Chain F

tRNA(Phe)

Nearby chains

Chain A

Phenylalanine--tRNA ligase alpha subunit

Chain B

Phenylalanine--tRNA ligase beta subunit

Chain E

Phenylalanine--tRNA ligase beta subunit