HL_7KGB_008

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGGUAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_008 not in the Motif Atlas

Geometric match to HL_6R47_001

Geometric discrepancy: 0.3842

The information below is about HL_6R47_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

7KGB|1|A|C|292
7KGB|1|A|G|293
7KGB|1|A|G|294
7KGB|1|A|G|295
7KGB|1|A|U|296
7KGB|1|A|A|297
7KGB|1|A|G|298
7KGB|1|A|G|299

Current chains

Chain A

23S rRNA

Nearby chains