HL_7KGB_010

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGGAUG

Length

8 nucleotides

Bulged bases

7KGB|1|A|U|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_010 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1083

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7KGB|1|A|C|388
7KGB|1|A|U|389
7KGB|1|A|G|390
7KGB|1|A|G|391
7KGB|1|A|G|392
7KGB|1|A|A|393
7KGB|1|A|U|394
7KGB|1|A|G|395

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24