HL_7KGB_014

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

7KGB|1|A|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0844

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7KGB|1|A|G|499
7KGB|1|A|G|500
7KGB|1|A|A|501
7KGB|1|A|C|502
7KGB|1|A|C|503
7KGB|1|A|A|504
7KGB|1|A|C|505
7KGB|1|A|C|506

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15