HL_7KGB_022

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCGCAUACGCGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_022 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3364

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7KGB|1|A|G|764
7KGB|1|A|C|765
7KGB|1|A|G|766
7KGB|1|A|C|767
7KGB|1|A|A|768
7KGB|1|A|U|769
7KGB|1|A|A|770
7KGB|1|A|C|771
7KGB|1|A|G|772
7KGB|1|A|C|773
7KGB|1|A|G|774
7KGB|1|A|C|775

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15