HL_7KGB_030

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_030 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.3309

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7KGB|1|A|G|1192
7KGB|1|A|C|1193
7KGB|1|A|U|1194
7KGB|1|A|U|1195
7KGB|1|A|A|1196
7KGB|1|A|G|1197
7KGB|1|A|A|1198
7KGB|1|A|A|1199
7KGB|1|A|G|1200
7KGB|1|A|C|1201
7KGB|1|A|A|1202
7KGB|1|A|G|1203
7KGB|1|A|C|1204

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16