HL_7KGB_039

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAGUGGUAACA

Length

12 nucleotides

Bulged bases

7KGB|1|A|G|1691, 7KGB|1|A|U|1692, 7KGB|1|A|C|1698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_039 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5563

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7KGB|1|A|U|1688
7KGB|1|A|C|1689
7KGB|1|A|A|1690
7KGB|1|A|G|1691
7KGB|1|A|U|1692
7KGB|1|A|G|1693
7KGB|1|A|G|1694
7KGB|1|A|U|1695
7KGB|1|A|A|1696
7KGB|1|A|A|1697
7KGB|1|A|C|1698
7KGB|1|A|A|1699

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17