HL_7KGB_062

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

7KGB|1|A|A|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_062 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0918

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7KGB|1|A|C|2642
7KGB|1|A|G|2643
7KGB|1|A|A|2644
7KGB|1|A|G|2645
7KGB|1|A|U|2646
7KGB|1|A|G|2647
7KGB|1|A|G|2648
7KGB|1|A|A|2649
7KGB|1|A|A|2650
7KGB|1|A|G|2651

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15