HL_7L08_063

3D structure

PDB id

7L08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

7L08|1|AA|C|1405, 7L08|1|AA|U|1406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7L08_063 not in the Motif Atlas

Geometric match to HL_4WSM_254

Geometric discrepancy: 0.3233

The information below is about HL_4WSM_254

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

7L08|1|AA|A|1399
7L08|1|AA|U|1400
7L08|1|AA|G|1401
7L08|1|AA|A|1402
7L08|1|AA|A|1403
7L08|1|AA|A|1404
7L08|1|AA|C|1405
7L08|1|AA|U|1406
7L08|1|AA|U|1407

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial