HL_7LH5_022

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCA

Length

53 nucleotides

Bulged bases

7LH5|1|AA|G|1002, 7LH5|1|AA|A|1005, 7LH5|1|AA|G|1024, 7LH5|1|AA|C|1030|||C, 7LH5|1|AA|G|1030|||D, 7LH5|1|AA|A|1030|||E, 7LH5|1|AA|G|1031, 7LH5|1|AA|A|1035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LH5|1|AA|U|997
7LH5|1|AA|G|998
7LH5|1|AA|C|999
7LH5|1|AA|U|1000
7LH5|1|AA|A|1001
7LH5|1|AA|G|1001|||A
7LH5|1|AA|G|1002
7LH5|1|AA|G|1003
7LH5|1|AA|A|1004
7LH5|1|AA|A|1005
7LH5|1|AA|C|1006
7LH5|1|AA|C|1007
7LH5|1|AA|C|1008
7LH5|1|AA|G|1009
7LH5|1|AA|G|1010
7LH5|1|AA|G|1011
7LH5|1|AA|U|1012
7LH5|1|AA|G|1013
7LH5|1|AA|A|1014
7LH5|1|AA|A|1015
7LH5|1|AA|A|1016
7LH5|1|AA|G|1017
7LH5|1|AA|C|1018
7LH5|1|AA|C|1019
7LH5|1|AA|U|1020
7LH5|1|AA|G|1021
7LH5|1|AA|G|1022
7LH5|1|AA|G|1023
7LH5|1|AA|G|1024
7LH5|1|AA|U|1025
7LH5|1|AA|G|1026
7LH5|1|AA|C|1027
7LH5|1|AA|C|1028
7LH5|1|AA|C|1029
7LH5|1|AA|C|1030
7LH5|1|AA|G|1030|||B
7LH5|1|AA|C|1030|||C
7LH5|1|AA|G|1030|||D
7LH5|1|AA|A|1030|||E
7LH5|1|AA|G|1031
7LH5|1|AA|G|1032
7LH5|1|AA|G|1033
7LH5|1|AA|G|1034
7LH5|1|AA|A|1035
7LH5|1|AA|G|1036
7LH5|1|AA|C|1037
7LH5|1|AA|C|1038
7LH5|1|AA|C|1039
7LH5|1|AA|U|1040
7LH5|1|AA|A|1041
7LH5|1|AA|G|1042
7LH5|1|AA|C|1043
7LH5|1|AA|A|1044

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AN

30S ribosomal protein S14 type Z

Chain AS

30S ribosomal protein S19

Chain CG

30S ribosomal protein S7

Chain DA

Large subunit ribosomal RNA; LSU rRNA