HL_7LH5_027

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

7LH5|1|AA|C|1317, 7LH5|1|AA|A|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_027 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1423

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7LH5|1|AA|C|1314
7LH5|1|AA|U|1315
7LH5|1|AA|G|1316
7LH5|1|AA|C|1317
7LH5|1|AA|A|1318
7LH5|1|AA|A|1319
7LH5|1|AA|C|1320
7LH5|1|AA|C|1321
7LH5|1|AA|C|1322
7LH5|1|AA|G|1323

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AN

30S ribosomal protein S14 type Z

Chain AS

30S ribosomal protein S19