HL_7LH5_039

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7LH5|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_039 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0944

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7LH5|1|BA|G|194
7LH5|1|BA|A|195
7LH5|1|BA|A|196
7LH5|1|BA|A|197
7LH5|1|BA|C|198
7LH5|1|BA|A|199
7LH5|1|BA|U|200
7LH5|1|BA|C|201

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15