HL_7LH5_081

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7LH5|1|BA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_081 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0777

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

7LH5|1|BA|G|1949
7LH5|1|BA|G|1950
7LH5|1|BA|U|1951
7LH5|1|BA|A|1952
7LH5|1|BA|A|1953
7LH5|1|BA|G|1954
7LH5|1|BA|U|1955
7LH5|1|BA|U|1956
7LH5|1|BA|C|1957

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

50S ribosomal protein L14