HL_7LH5_098

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7LH5|1|BA|G|2751, 7LH5|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_098 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1657

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

7LH5|1|BA|C|2745
7LH5|1|BA|U|2746
7LH5|1|BA|G|2747
7LH5|1|BA|A|2748
7LH5|1|BA|A|2749
7LH5|1|BA|A|2750
7LH5|1|BA|G|2751
7LH5|1|BA|C|2752
7LH5|1|BA|A|2753
7LH5|1|BA|U|2754
7LH5|1|BA|C|2755
7LH5|1|BA|U|2756
7LH5|1|BA|A|2757
7LH5|1|BA|A|2758
7LH5|1|BA|G|2759

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13