HL_7LH5_099

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

7LH5|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_099 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0567

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7LH5|1|BA|G|2819
7LH5|1|BA|A|2820
7LH5|1|BA|A|2821
7LH5|1|BA|G|2822
7LH5|1|BA|A|2823
7LH5|1|BA|C|2824
7LH5|1|BA|C|2825
7LH5|1|BA|A|2826
7LH5|1|BA|C|2827

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L17