HL_7LH5_110

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_110 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1117

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7LH5|1|CA|C|320
7LH5|1|CA|A|321
7LH5|1|CA|C|322
7LH5|1|CA|U|323
7LH5|1|CA|G|324
7LH5|1|CA|A|325
7LH5|1|CA|G|326
7LH5|1|CA|A|327
7LH5|1|CA|C|328
7LH5|1|CA|A|329
7LH5|1|CA|C|330
7LH5|1|CA|G|331
7LH5|1|CA|G|332
7LH5|1|CA|G|333

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20