HL_7LH5_137
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LH5_137 not in the Motif Atlas
- Homologous match to HL_5AH5_008
- Geometric discrepancy: 0.1293
- The information below is about HL_5AH5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
7LH5|1|CV|G|53
7LH5|1|CV|U|54
7LH5|1|CV|U|55
7LH5|1|CV|C|56
7LH5|1|CV|A|57
7LH5|1|CV|A|58
7LH5|1|CV|A|59
7LH5|1|CV|U|60
7LH5|1|CV|C|61
Current chains
- Chain CV
- P-site tRNA fMet
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S ribosomal protein L5
- Chain DQ
- 50S ribosomal protein L16
Coloring options: