HL_7LH5_153

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

7LH5|1|DA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_153 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0721

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7LH5|1|DA|G|382
7LH5|1|DA|U|383
7LH5|1|DA|U|384
7LH5|1|DA|C|385
7LH5|1|DA|G|386
7LH5|1|DA|U|387
7LH5|1|DA|G|388
7LH5|1|DA|G|389
7LH5|1|DA|A|390
7LH5|1|DA|G|391
7LH5|1|DA|C|392

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DP

50S ribosomal protein L15