HL_7LH5_170

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

7LH5|1|DA|A|1174, 7LH5|1|DA|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_170 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3466

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7LH5|1|DA|G|1170
7LH5|1|DA|G|1171
7LH5|1|DA|G|1173
7LH5|1|DA|A|1174
7LH5|1|DA|U|1175
7LH5|1|DA|G|1176
7LH5|1|DA|A|1177
7LH5|1|DA|C|1178
7LH5|1|DA|C|1179

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DV

50S ribosomal protein L21