HL_7LH5_175

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7LH5|1|DA|U|1396, 7LH5|1|DA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_175 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0889

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7LH5|1|DA|G|1389
7LH5|1|DA|U|1390
7LH5|1|DA|U|1391
7LH5|1|DA|A|1392
7LH5|1|DA|A|1393
7LH5|1|DA|U|1394
7LH5|1|DA|A|1395
7LH5|1|DA|U|1396
7LH5|1|DA|U|1397
7LH5|1|DA|C|1398

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L23