HL_7LH5_196

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_196 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0895

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

7LH5|1|DA|C|2324
7LH5|1|DA|G|2325
7LH5|1|DA|C|2326
7LH5|1|DA|A|2327
7LH5|1|DA|A|2328
7LH5|1|DA|G|2329
7LH5|1|DA|G|2330
7LH5|1|DA|G|2331

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain D0

50S ribosomal protein L27

Chain DG

50S ribosomal protein L5

Chain DQ

50S ribosomal protein L16