HL_7LS1_009
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 7LS1|1|A2|G|315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_009 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.2572
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
7LS1|1|A2|G|314
7LS1|1|A2|G|315
7LS1|1|A2|U|316
7LS1|1|A2|A|317
7LS1|1|A2|A|318
7LS1|1|A2|A|319
7LS1|1|A2|C|320
7LS1|1|A2|U|321
7LS1|1|A2|C|322
7LS1|1|A2|C|323
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain H1
- 60S ribosomal protein L15
- Chain U2
- 60S ribosomal protein L27a
- Chain c2
- 60S ribosomal protein L36
- Chain i2
- 60S ribosomal protein L36a
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