HL_7LS1_037

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7LS1|1|A2|U|2285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_037 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.4331

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7LS1|1|A2|G|2278
7LS1|1|A2|U|2279
7LS1|1|A2|U|2280
7LS1|1|A2|C|2281
7LS1|1|A2|A|2282
7LS1|1|A2|G|2283
7LS1|1|A2|A|2284
7LS1|1|A2|U|2285
7LS1|1|A2|C|2286
7LS1|1|A2|C|2287

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain R2

60S ribosomal protein L23a

Chain a2

60S ribosomal protein L34