HL_7LS1_054

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

7LS1|1|A2|A|3532, 7LS1|1|A2|A|3533, 7LS1|1|A2|C|3534, 7LS1|1|A2|G|3537

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0971

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7LS1|1|A2|G|3529
7LS1|1|A2|G|3530
7LS1|1|A2|G|3531
7LS1|1|A2|A|3532
7LS1|1|A2|A|3533
7LS1|1|A2|C|3534
7LS1|1|A2|G|3535
7LS1|1|A2|P7G|3536
7LS1|1|A2|G|3537
7LS1|1|A2|C|3538

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain I2

60S ribosomal protein L13a

Chain Y2

60S ribosomal protein L32