HL_7LS1_055

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUGUAGAAUAAGUGGGAGGCCCGGCCGCCGGUGAAAUACCACUAC

Length

46 nucleotides

Bulged bases

7LS1|1|A2|G|3614, 7LS1|1|A2|A|3618, 7LS1|1|A2|A|3621, 7LS1|1|A2|C|3633, 7LS1|1|A2|C|3688, 7LS1|1|A2|C|3691, 7LS1|1|A2|G|3692, 7LS1|1|A2|U|3694, 7LS1|1|A2|A|3696, 7LS1|1|A2|A|3697, 7LS1|1|A2|A|3703, 7LS1|1|A2|C|3704

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|G|3611
7LS1|1|A2|G|3612
7LS1|1|A2|U|3613
7LS1|1|A2|G|3614
7LS1|1|A2|U|3615
7LS1|1|A2|A|3616
7LS1|1|A2|G|3617
7LS1|1|A2|A|3618
7LS1|1|A2|A|3619
7LS1|1|A2|U|3620
7LS1|1|A2|A|3621
7LS1|1|A2|A|3622
7LS1|1|A2|G|3623
7LS1|1|A2|U|3624
7LS1|1|A2|G|3625
7LS1|1|A2|G|3626
7LS1|1|A2|G|3627
7LS1|1|A2|A|3628
7LS1|1|A2|G|3629
7LS1|1|A2|G|3630
7LS1|1|A2|C|3631
7LS1|1|A2|C|3632
7LS1|1|A2|C|3633
7LS1|1|A2|G|3685
7LS1|1|A2|G|3686
7LS1|1|A2|C|3687
7LS1|1|A2|C|3688
7LS1|1|A2|G|3689
7LS1|1|A2|C|3690
7LS1|1|A2|C|3691
7LS1|1|A2|G|3692
7LS1|1|A2|G|3693
7LS1|1|A2|U|3694
7LS1|1|A2|G|3695
7LS1|1|A2|A|3696
7LS1|1|A2|A|3697
7LS1|1|A2|A|3698
7LS1|1|A2|U|3699
7LS1|1|A2|A|3700
7LS1|1|A2|C|3701
7LS1|1|A2|C|3702
7LS1|1|A2|A|3703
7LS1|1|A2|C|3704
7LS1|1|A2|U|3705
7LS1|1|A2|A|3706
7LS1|1|A2|C|3707

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L1

60S ribosomal protein L10a

Chain n2

Transfer RNA; tRNA