HL_7LS1_058

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7LS1|1|A2|G|3847

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_058 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.2921

The information below is about HL_8P9A_165

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7LS1|1|A2|C|3845
7LS1|1|A2|I4U|3846
7LS1|1|A2|G|3847
7LS1|1|A2|OMG|3848
7LS1|1|A2|G|3849
7LS1|1|A2|G|3850
7LS1|1|A2|C|3851
7LS1|1|A2|G|3852
7LS1|1|A2|G|3853

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

60S ribosomal protein L10-like

Chain V2

60S ribosomal protein L29