HL_7LS1_060

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_060 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1451

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7LS1|1|A2|G|3902
7LS1|1|A2|A|3903
7LS1|1|A2|C|3904
7LS1|1|A2|A|3905
7LS1|1|A2|G|3906
7LS1|1|A2|A|3907
7LS1|1|A2|A|3908
7LS1|1|A2|A|3909
7LS1|1|A2|C|3910

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E1

60S ribosomal protein L11