HL_7LS1_071

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7LS1|1|A2|G|4346, 7LS1|1|A2|C|4350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1462

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7LS1|1|A2|C|4340
7LS1|1|A2|U|4341
7LS1|1|A2|G|4342
7LS1|1|A2|A|4343
7LS1|1|A2|A|4344
7LS1|1|A2|C|4345
7LS1|1|A2|G|4346
7LS1|1|A2|C|4347
7LS1|1|A2|C|4348
7LS1|1|A2|U|4349
7LS1|1|A2|C|4350
7LS1|1|A2|U|4351
7LS1|1|A2|A|4352
7LS1|1|A2|A|4353
7LS1|1|A2|G|4354

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain I2

60S ribosomal protein L13a

Chain g2

Ubiquitin-60S ribosomal protein L40