HL_7LS1_072

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7LS1|1|A2|A|4555, 7LS1|1|A2|A|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_072 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2307

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7LS1|1|A2|C|4551
7LS1|1|A2|G|4552
7LS1|1|A2|G|4553
7LS1|1|A2|A|4554
7LS1|1|A2|A|4555
7LS1|1|A2|A|4556
7LS1|1|A2|G|4557
7LS1|1|A2|G|4558
7LS1|1|A2|G|4559
7LS1|1|A2|G|4560

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain I2

60S ribosomal protein L13a