HL_7LS1_073

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7LS1|1|A2|U|4622

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_073 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1215

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7LS1|1|A2|G|4621
7LS1|1|A2|U|4622
7LS1|1|A2|A|4623
7LS1|1|A2|G|4624
7LS1|1|A2|A|4625
7LS1|1|A2|C|4626
7LS1|1|A2|G|4627
7LS1|1|A2|A|4628
7LS1|1|A2|C|4629

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain J2

60S ribosomal protein L17