HL_7LS1_074

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_074 not in the Motif Atlas

Homologous match to HL_8P9A_182

Geometric discrepancy: 0.5873

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

7LS1|1|A2|C|4667
7LS1|1|A2|U|4668
7LS1|1|A2|C|4669
7LS1|1|A2|C|4670
7LS1|1|A2|C|4671
7LS1|1|A2|U|4672
7LS1|1|A2|C|4673
7LS1|1|A2|G|4674

Current chains

Chain A2

28S rRNA

Nearby chains

Chain u

40S ribosomal protein S8