HL_7LS1_076

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_076 not in the Motif Atlas

Homologous match to HL_7A0S_070

Geometric discrepancy: 0.2126

The information below is about HL_7A0S_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

7LS1|1|B2|G|86
7LS1|1|B2|G|87
7LS1|1|B2|A|88
7LS1|1|B2|G|89
7LS1|1|B2|A|90
7LS1|1|B2|C|91

Current chains

Chain B2

5S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain D1

60S ribosomal protein L10-like

Chain M2

60S ribosomal protein L18a